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Additional files for "Molecular variation across populations of a widespread North American firefly, Photinus pyralis, reveals that coding changes do not underlie flash color variation or associated visual sensitivity"

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posted on 2018-08-15, 20:08 authored by Sarah Sander LowerSarah Sander Lower, Kathrin Stanger-Hall, David W. Hall
Contents:
1.Specimens_used_for_sequencing
Collection information for specimens used

2a-c. Alignments used for assessing luciferase variation (.nex files)

3. lenient.hw.vcf
vcf-format file for 2019 RAD loci used in analysis

4. lenient.hw.sigloci_noLUC804.gen.complete.txt
genpop-format file of 2019 RAD loci and variable luciferase, LW opsin, and UV opsin SNPs

5.Selection_analysis_signal_loci.txt
Tab-delimited file with results from 10 LOSITAN and 2 BayeScan runs

6. SUPPLEMENTARY FILE Optimization 7_8_17
Word document showing stacks parameter optimization output

Funding

National Science Foundation (GRF to SEL, DDIG DEB-1311315 to DWH and SEL, DEB-0074953 to KFS), and the NIGMS of the National Institute of Health (award number T32GM007103 to SEL)

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    Categories

    Keywords

    LampyridaePhotinus pyralissensory driveluciferaseopsinsCOIpopulation structureselectionFstNorth AmericaBiogeography and PhylogeographyEvolutionary BiologyGenomicsInvertebrate BiologyPopulation, Ecological and Evolutionary Genetics

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    CC BY 4.0

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