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Additional file 7: Figure S6. of Distinguishing potential bacteria-tumor associations from contamination in a secondary data analysis of public cancer genome sequence data

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posted on 2017-01-25, 05:00 authored by Kelly Robinson, Jonathan Crabtree, John Mattick, Kathleen Anderson, Julie Dunning Hotopp
The proportion of bacterial read pairs for RNA-Seq (panel A), whole genome sequencing (WGS, panel B), and whole exome sequencing (WXS, panel C) for an individual stomach adenocarcinoma (STAD) sample are illustrated. The RNA-Seq data shows an enrichment of Proteobacteria that have low proportions in the WGS and WXS data. WGS and WXS sequencing methods resulted in a more diverse collection of bacterial read pairs with only minor differences between the two methods. (PDF 445 kb)

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