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Additional file 6 of Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose

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posted on 2020-04-14, 03:32 authored by Jolanda M. van Munster, Paul Daly, Martin J. Blythe, Roger Ibbett, Matt Kokolski, Sanyasi Gaddipati, Erika Lindquist, Vasanth R. Singan, Kerrie W. Barry, Anna Lipzen, Chew Yee Ngan, Christopher J. Petzold, Leanne Jade G. Chan, Mikko Arvas, Roxane Raulo, Steven T. Pullan, Stéphane Delmas, Igor V. Grigoriev, Gregory A. Tucker, Blake A. Simmons, David B. Archer
Additional file 6: Table S4. PCA loadings and enrichment of GO-terms in genes distinguishing sample clusters. Loadings of genes on the first 10 components are given of the PCA analysis of all cultivation conditions, and of those from the 9 h and 12 h time points of the Miscanthus time course. Results are included of GO-enrichment analysis (via gProfiler) of genes with high loadings on the PCA components corresponding to the sample clusters identified in Fig. 2, i.e. Cluster 1 PCA1 < 0 PCA2 < 0; Cluster 2 PCA1 > 0; Cluster 3 PCA1 < 0 PCA2 > 0; Cluster 3a PCA1 < 0 PCA > 0 PCA3 > 0. GO-enrichment analysis are also included for 9 h and 12 h Miscanthus conditions PCA1 < 0 PCA2 < 0 (HTM specific) and for PCA4 > 0 (Wheat straw specific).

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Biotechnology and Biological Sciences Research Council U.S. Department of Energy

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