Additional file 3: of Regulatory network changes between cell lines and their tissues of origin

Differential expression analysis. (A) Volcano plots of the differential expression analysis using voom on paired samples between the indicated groups. The lines indicate a log2 fold change of −2 or 2. (B) Percentage of genes called differentially expressed (DE) varying the log2 fold change at a FDR < 0.05. (PDF 1114 kb)