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12870_2015_694_MOESM3_ESM.bz2 (9.22 MB)
Additional file 3: of Physiological and transcriptional analyses of developmental stages along sugarcane leaf
dataset
posted on 2015-12-29, 05:00 authored by Lucia Mattiello, Diego Riaño-Pachón, Marina Martins, Larissa da Cruz, Denis Bassi, Paulo Marchiori, Rafael Ribeiro, Mônica Labate, Carlos Labate, Marcelo MenossiAssembled transcripts were annotated with Trinotate ( https://trinotate.github.io/ ). Transcripts were mapped against the databases UniProt, PFAM, UniRef90. Subcellular location was predicted using SignalP. Transmembrane regions were identify by tmHMM. Ribosomal RNA genes were predicted by RNAMMER. All results were loaded into a SQLite DB as per Trinotate instruction and results were exported into tabular format. For details of the format of this table please check https://trinotate.github.io/ . (BZ2 9438 kb)