13073_2018_574_MOESM2_ESM.pdf (407.27 kB)
Additional file 2: of Genomic exploration of sequential clinical isolates reveals a distinctive molecular signature of persistent Staphylococcus aureus bacteraemia
journal contribution
posted on 2018-08-23, 05:00 authored by Stefano Giulieri, Sarah Baines, Romain Guerillot, Torsten Seemann, Anders Gonรงalves da Silva, Mark Schultz, Ruth Massey, Natasha Holmes, Timothy Stinear, Benjamin HowdenFigure S1. Flow diagram of the study. Figure S2. Impact of filtering on number of variants. Figure S3. Variant calls excluded after filtering. Figure S4. Number of mutations separating paired invasive isolates from the index blood isolate according to quartiles of the sample collection interval. Figure S5. Episode-specific phylogenetic trees (patient 27 and patient 38). Figure S6. Enrichment analysis of COG categories. Figure S7. Phenotypic comparison of invasive pairs. Figure S8. Associations between number of mutations and number of IS256 insertions. Figure S9. IS256 distribution. (PDF 407 kb)