Additional file 1: of Genetic assessment of inbred chicken lines indicates genomic signatures of resistance to Marek’s disease

Figure S1. Histogram plot of MD incidence (%) rate. MD resistance in chickens is generally evaluated with MD incidence (induced gross tumors by MDV) and survival day post MDV challenge, and the extent of resistance is dependent of the virulence of challenge viruses and other factors. Figure S2. Barplot show the call rate for 30 chickens on Affymetrix chicken SNP genotyping array. X axis represent the call rate values, and Y axis represents the chicken individuals. Figure S3. Frequency distribution in autosomes for a total of 527,021 SNPs on the Affymetrix chicken SNP genotyping array. Figure S4. Frequency distribution in autosomes for 155,216 SNPs on the Affymetrix chicken SNP genotyping array. Figure S5. Comparison of ROH regions among three groups, line 63, line 72, lines RCS (C, L, M, N, S, X). The overlap length of ROH was indicated in kb. (DOCX 35 kb)