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ATP:ADP antiporter mimics turbo-state.

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posted on 2013-12-05, 02:47 authored by Eduard J. Kerkhoven, Fiona Achcar, Vincent P. Alibu, Richard J. Burchmore, Ian H. Gilbert, Maciej Trybiło, Nicole N. Driessen, David Gilbert, Rainer Breitling, Barbara M. Bakker, Michael P. Barrett

(A) Overview of the models used in this figure. Model A and D are from Figure 1, model A–glyc is model A without glycosomal localization, as described in [31], model A+AAT is model A with an ATP:ADP antiporter. (B–C) Steady-state concentrations of glycosomal Glc-6-P and Fru-1,6-BP are depicted in the various models. (D) Increasing the activity of the ATP:ADP antiporter (Vmax,ATP:ADP antiporter) in model D leads to a high risk of accumulation of hexose phosphates. The green line indicates the concentration of Fru-1,6-BP in the original model of glycolysis (17.2 mM, panel C, model A). Glce in this simulation is 25 mM. (E) Time course simulation of model D at 25 mM Glce and various values for the Vmax,ATP:ADP antiporter parameter. Plotted is the concentration of glycosomal phosphates (ΣP similar as in Figure 2, moiety 5 in Table 2). ATP:ADP antiporter activity values below 1 nmol·min−1·mg protein−1 result in depletion of glycosomal phosphates (cf. Figure 2). kTOX = 2 µl·min−1·mg protein−1 in all models. Solid lines indicate medians, shaded areas and error bars show interquartile ranges, as derived from the uncertainty modeling.

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