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ASaiM workflow to analyze raw metagenomic sequences
Version 3 2017-09-02, 13:59
Version 2 2017-09-02, 13:54
Version 1 2017-09-02, 13:49
dataset
posted on 2017-09-02, 13:59 authored by Bérénice BatutBérénice Batut, Kévin Gravouil, Clémence Defois, Saskia Hiltemann, Jean-François Brugère, Eric Peyretaillade, Pierre PeyretThe main workflow of ASaiM, an open-source opinionated Galaxy-based framework for microbiota analysis.
This workflow takes as input a dataset of raw shotgun sequences (in FastQ format) from microbiota, preprocess it (yellow boxes), extracts taxonomic (red boxes) and functional (purple boxes) assignations and combines them (green boxes).
