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ARMOR: an Automated Reproducible MOdular workflow for preprocessing and differential analysis of RNA-seq data
Version 3 2019-04-26, 12:55
Version 2 2019-04-26, 12:52
Version 1 2019-04-25, 09:50
dataset
posted on 2019-04-26, 12:55 authored by Mark RobinsonMark Robinson, Stephany Orjuela, Katharina Hembach, Ruizhu Huang, Charlotte SonesonThe archive contains:
1. A list of 2 SingleCellExperiment objects (one for transcript-level, one for gene-level) for the processing of the Chiron RNA-seq dataset.
The original file was:
E-MTAB-7029/output/outputR/shiny_sce.rds
Data can be read in with the following command:
z <- readRDS("shiny_sce.rds")
2. The set of generated bigwig files.
3. The MultiQC HTML report
Further details of how to use the RDS object (1. above) and the bigwigs (2. above) with the iSEE package can be found at the ARMOR wiki page:
https://github.com/csoneson/ARMOR/wiki/Visualizing-results-with-iSEE
