Overview of the FLEA pipeline, broken into conceptual sub-pipelines.
Kemal Eren
Steven Weaver
Robert Ketteringham
Morné Valentyn
Melissa Laird Smith
Venkatesh Kumar
Sanjay Mohan
Sergei L. Kosakovsky Pond
Ben Murrell
10.1371/journal.pcbi.1006498.g001
https://plos.figshare.com/articles/figure/Overview_of_the_FLEA_pipeline_broken_into_conceptual_sub-pipelines_/7464347
<p>The <i>Quality</i> and <i>Consensus</i> sub-pipelines process each time point separately. Duplicate steps in other time points are grayed out. CCS stands for “circular consensus sequences”; QCS for “quality-controlled sequences”, and HQCS for “high-quality consensus sequences”.</p>
2018-12-13 18:56:46
dynamic
alignment
visualization
HIV vaccine studies
long-read sequencing data
time series plots
client-side web application
P 018 results
sequence
HQCS
pipeline
Full-Length Envelope Analyzer
HIV env populations
process Pacific Biosciences HIV env data
http
Python source code
FASTQ
FLEA
long-read sequencing
analysis
phylogenetic tree browser