Overview of the FLEA pipeline, broken into conceptual sub-pipelines. Kemal Eren Steven Weaver Robert Ketteringham Morné Valentyn Melissa Laird Smith Venkatesh Kumar Sanjay Mohan Sergei L. Kosakovsky Pond Ben Murrell 10.1371/journal.pcbi.1006498.g001 https://plos.figshare.com/articles/figure/Overview_of_the_FLEA_pipeline_broken_into_conceptual_sub-pipelines_/7464347 <p>The <i>Quality</i> and <i>Consensus</i> sub-pipelines process each time point separately. Duplicate steps in other time points are grayed out. CCS stands for “circular consensus sequences”; QCS for “quality-controlled sequences”, and HQCS for “high-quality consensus sequences”.</p> 2018-12-13 18:56:46 dynamic alignment visualization HIV vaccine studies long-read sequencing data time series plots client-side web application P 018 results sequence HQCS pipeline Full-Length Envelope Analyzer HIV env populations process Pacific Biosciences HIV env data http Python source code FASTQ FLEA long-read sequencing analysis phylogenetic tree browser