Commun_Biol_aphelid_datasets TorruellaGuifré 2018 <div><b>Transcriptome assembly</b></div><div>Metatranscriptome of <i>Paraphelidium tribonemae</i> (PRJNA402032) assembled with trinity, cleaned from non-eukaryote sequences using blobtools with the refseq taxonomy affiliation & cleaned from eukaryote contamination with blastp using a custom database with fungi & stramenopiles. 10,669 cleaned peptides predicted with transdecoder and annotated with eggnog-mapper.<div><br></div><div>Version 1.5 contains 10,439 peptides, after removing 230 peptides with high identity (97% to 100%) with <i>Tribonema gayanum</i> RNA-seq (unpublished).</div></div><div><br></div><div><b>Phylogenomics</b></div>3 protein datasets were used to infer the position of <i>Paraphelidium tribonemae</i>. All were previously used for phylogenomic analyses of Opisthokonta and, more specifically, Microsporidia. They are:<div>- SCPD: 93 single-copy protein domains (SCPD) from Torruella et al. 2015 Curr Biol.</div><div>- BMC: 53 proteins updated from Capella-Gutiérrez et al. 2012 BMC Biol.</div><div>- GBE: 259 proteins updated from Mikhailov et al. 2017 Genome Biol Evol.</div><div><br></div><div>Here you can find the concatenated supermatrices 49sp and 36sp; with and without long-branch microsporidians respectively.</div>