Supplemental Material for Snoeck et al., 2018
Simon Snoeck
Nicky Wybouw
Thomas Van Leeuwen
Wannes Dermauw
10.25387/g3.7189412.v1
https://gsajournals.figshare.com/articles/dataset/Supplemental_Material_for_Snoeck_et_al_2018/7189412
File S1 contains the CDS sequences of the <i>T. urticae</i> genome annotation of August
11, 2016. File S2 contains the protein sequences of the short-chain
dehydrogenases of <i>T. urticae</i>, <i>M. occidentalis</i>, <i>D. melanogaster</i> and <i>H. sapiens</i>
that were included in the phylogenetic analysis. File S3 contains the sequences
of the full-length single PLAT domain proteins of <i>T. urticae</i>, <i>T. evansi</i>, <i>P. ulmi</i> and <i>P. citri</i> that were included in the phylogenetic analysis. Figure S1
shows the expression heatmaps of genes coding for group I and II SDRs and of group
I and II single PLAT domain protein genes across the replicated <i>T. urticae</i> host plant populations (lima
bean, soybean, cotton, tomato and maize). Table S1 contains the differential
gene expression results of the <i>T. urticae</i>
host plant populations. Table S2 shows the overlap between DEGs of the
different <i>T. urticae</i> host plant populations.
Table S3 shows the <i>k</i>-means clustering
of the DEGs identified in the different host plant populations of <i>T. urticae</i>. Table S4 shows the OrthoMCL grouping
of the <i>T. urticae</i> proteome. Table S5
contains the OrthoMCL enrichment results of the DEG sets of each<i> T. urticae</i> host plant population. Table
S6 contains the significantly enriched GO terms in the DEG sets of the
different host plant populations of <i>T.
urticae</i>. Table S7 contains the short-chain dehydrogenase genes annotated in
the <i>T. urticae</i> genome. Table S8
contains the single PLAT domain protein genes annotated in the <i>T. urticae</i> genome. <i>T. urticae</i> gene expression data
are available at the Gene Expression
Omnibus with accession numbers GSE50162, GSE80337 and
GSE68708. <br>
2018-10-17 14:51:15
plant defense
host plant use
xenobiotic metabolism
single PLAT domain protein
short-chain dehydrogenases
polyphagy
Tetranychus urticae
spider mite
herbivore
transcriptomic plasticity
Animal Physiological Ecology
Biological Adaptation
Evolutionary Biology
Gene Expression (incl. Microarray and other genome-wide approaches)