TY - DATA T1 - CAZY (carbohydrate processing enzymes) PFAM containing proteins in TGAC Chalara fraxinea assembly 1, Postia placenta and Fusarium graminareum PY - 2013/05/24 AU - Dan MacLean UR - https://figshare.com/articles/figure/CAZY_carbohydrate_processing_enzymes_PFAM_containing_proteins_in_TGAC_Chalara_fraxinea_assembly_1_Postia_placenta_and_Fusarium_graminareum/706773 DO - 10.6084/m9.figshare.706773.v1 L4 - https://ndownloader.figshare.com/files/3089948 KW - genomics KW - bioinformatics KW - ashdieback KW - Molecular Biology KW - Bioinformatics KW - Genetics KW - Microbiology N2 - Proteins predicted in Chalara fraxinea (https://github.com/ash-dieback-crowdsource/data/blob/master/ash_dieback/chalara_fraxinea/Kenninghall_wood_KW1/annotations/Gene_predictions/TGAC_Chalara_fraxinea_ass_s1v1_ann_v1.1/Chalara_fraxinea_ass_s1v1_ann_v1.1.protein.faa) Postia placenta (http://genome.jgi.doe.gov/Pospl1/Pospl1.home.html) and  Fusarium graminareum (http://www.broadinstitute.org/annotation/genome/fusarium_group/MultiHome.html)   were used in PFAMSCAN to identify proteins containing domains from the list at E<=1e-6:   #name clan idAlpha-amylase Glyco_hydro_tim CL0058Alpha_L_fucos Glyco_hydro_tim CL0058Cellulase Glyco_hydro_tim CL0058Cellulase-like Glyco_hydro_tim CL0058DUF187 Glyco_hydro_tim CL0058DUF4015 Glyco_hydro_tim CL0058DUF4038 Glyco_hydro_tim CL0058DUF4434 Glyco_hydro_tim CL0058GHL1-3 Glyco_hydro_tim CL0058GHL12 Glyco_hydro_tim CL0058GHL13 Glyco_hydro_tim CL0058GHL15 Glyco_hydro_tim CL0058GHL5 Glyco_hydro_tim CL0058GHL6 Glyco_hydro_tim CL0058Glyco_hydr_30_2 Glyco_hydro_tim CL0058Glyco_hydro_1 Glyco_hydro_tim CL0058Glyco_hydro_10 Glyco_hydro_tim CL0058Glyco_hydro_101 Glyco_hydro_tim CL0058Glyco_hydro_114 Glyco_hydro_tim CL0058Glyco_hydro_14 Glyco_hydro_tim CL0058Glyco_hydro_17 Glyco_hydro_tim CL0058Glyco_hydro_18 Glyco_hydro_tim CL0058Glyco_hydro_20 Glyco_hydro_tim CL0058Glyco_hydro_25 Glyco_hydro_tim CL0058Glyco_hydro_26 Glyco_hydro_tim CL0058Glyco_hydro_2_C Glyco_hydro_tim CL0058Glyco_hydro_3 Glyco_hydro_tim CL0058Glyco_hydro_30 Glyco_hydro_tim CL0058Glyco_hydro_31 Glyco_hydro_tim CL0058Glyco_hydro_35 Glyco_hydro_tim CL0058Glyco_hydro_39 Glyco_hydro_tim CL0058Glyco_hydro_42 Glyco_hydro_tim CL0058Glyco_hydro_44 Glyco_hydro_tim CL0058Glyco_hydro_53 Glyco_hydro_tim CL0058Glyco_hydro_56 Glyco_hydro_tim CL0058Glyco_hydro_59 Glyco_hydro_tim CL0058Glyco_hydro_66 Glyco_hydro_tim CL0058Glyco_hydro_70 Glyco_hydro_tim CL0058Glyco_hydro_72 Glyco_hydro_tim CL0058Glyco_hydro_77 Glyco_hydro_tim CL0058Glyco_hydro_79n Glyco_hydro_tim CL0058Glyco_hydro_97 Glyco_hydro_tim CL0058Glyco_hydro_cc Glyco_hydro_tim CL0058hDGE_amylase Glyco_hydro_tim CL0058Lipid_bd Glyco_hydro_tim CL0058Melibiase Glyco_hydro_tim CL0058NAGidase Glyco_hydro_tim CL0058NAGLU Glyco_hydro_tim CL0058Raffinose_syn Glyco_hydro_tim CL0058Xylanase Glyco_hydro_tim CL0058Alg14 Glyco_tran_28_C PF04101Capsule_synth Glyco_tran_28_C PF04101DUF1205 Glyco_tran_28_C PF04101DUF1972 Glyco_tran_28_C PF04101DUF3492 Glyco_tran_28_C PF04101DUF354 Glyco_tran_28_C PF04101Epimerase_2 Glyco_tran_28_C PF04101Glyco_tran_28_C Glyco_tran_28_C PF04101Glyco_trans_1_2 Glyco_tran_28_C PF04101Glyco_trans_1_3 Glyco_tran_28_C PF04101Glyco_trans_1_4 Glyco_tran_28_C PF04101Glyco_trans_4_2 Glyco_tran_28_C PF04101Glyco_trans_4_3 Glyco_tran_28_C PF04101Glyco_trans_4_4 Glyco_tran_28_C PF04101Glyco_transf_20 Glyco_tran_28_C PF04101Glyco_transf_28 Glyco_tran_28_C PF04101Glyco_transf_4 Glyco_tran_28_C PF04101Glyco_transf_41 Glyco_tran_28_C PF04101Glyco_transf_5 Glyco_tran_28_C PF04101Glyco_transf_56 Glyco_tran_28_C PF04101Glyco_transf_9 Glyco_tran_28_C PF04101Glyco_transf_90 Glyco_tran_28_C PF04101Glycogen_syn Glyco_tran_28_C PF04101Glycos_transf_1 Glyco_tran_28_C PF04101Glycos_transf_N Glyco_tran_28_C PF04101Glyphos_transf Glyco_tran_28_C PF04101LpxB Glyco_tran_28_C PF04101MGDG_synth Glyco_tran_28_C PF04101Mito_fiss_Elm1 Glyco_tran_28_C PF04101Phosphorylase Glyco_tran_28_C PF04101PIGA Glyco_tran_28_C PF04101PS_pyruv_trans Glyco_tran_28_C PF04101SUA5 Glyco_tran_28_C PF04101Sucrose_synth Glyco_tran_28_C PF04101UDPGT Glyco_tran_28_C PF04101Aldose_epim Lyase_8 PF02278Bgal_small_N Lyase_8 PF02278DUF4432 Lyase_8 PF02278Gal_mutarotas_2 Lyase_8 PF02278Glyco_hyd_65N_2 Lyase_8 PF02278Glyco_hydro_38C Lyase_8 PF02278Glyco_hydro_65N Lyase_8 PF02278Lyase_8 Lyase_8 PF02278MdoG Lyase_8 PF02278Rhamnogal_lyase Lyase_8 PF02278YidC_periplas Lyase_8 PF02278 (identified from CAZy - Home)    Counts of proteins containing each PFAM domain are shown       ER -