Unweighted UniFrac distances
Daniel McDonald
Daniel McDonald
Adam Robbins-Pianka
Allison E. Mann
Alison Vrbanac
Amnon Amir
Angel Frazier
Antonio Gonzalez
Anupriya Tripathi
Ashkaan K. Fahimipour
Caitriona Brennen
Cameron Martino
Carlito Lebrilla
Catherine Lozupone
Cecil M. Lewis Jr.
Charles Raison
Chi Zhang
Christian L. Lauber
Christina Warinner
Christopher A. Lowry
Chris Callewaert
Cinnamon Bloss
Curtis Huttenhower
Dan Knights
Dana Willner
Daniela Domingos Galzerani
David J. Gonzalez
David A. Mills
Deepak Chopra
Dirk Gevers
Donna Berg-Lyons
Dorothy D. Sears
Doug Wendel
Elaine Wolfe
Elijah Lovelace
Embriette R. Hyde
Emily Pierce
Emily TerAvest
Emmanuel Montassier
Evan Bolyen
Frederic D. Bushman
Gail Ackermann
Gary D. Wu
George M. Church
Gholamali Rahnavard
Gordon Saxe
Grant Gogul
Gregory Humphrey
Hannah D. Holscher
Ivo Ugrina
J. Bruce German
J. Gregory Caporaso
Jack Gilbert
Jacob M. Wozniak
Jacqueline Kerr
Jacques Ravel
James Gaffney
James D. Lewis
James T. Morton
Jan S. Suchodolski
Janet K. Jansson
Jarrad T. Hampton-Marcell
Jason Bobe
Jeff Leach
Jeroen Raes
Jessica L. Green
Jessica L. Metcalf
John H. Chase
Jonathan A. Eisen
Jonathan Monk
Jose A. Navas-Molina
Jose C. Clemente
Joseph Petrosino
Joshua Ladau
Joshua Shorenstein
Julia Goodrich
Julia Gauglitz
Julian Jacobs
Justine W. Debelius
Karsten Zengler
Katherine S. Pollard
Kelly S. Swanson
Kim Lewis
Kris Mayer
Kyle Bittinger
Lindsay DeRight Goldasich
Lindsay Dillon
Livia S. Zaramela
Luke R. Thompson
Lynn M. Schriml
Maria G. Dominguez-Bello
Marta M. Jankowska
Martin Blaser
Matthew A. Jackson
Meg Pirrung
Michael Minson
Mike Kurisu
Nadim Ajami
Naseer Sangwan
Neil R. Gottel
Nicholas Chia
Noah Fierer
Owen White
Patrice D. Cani
Paul Wischmeyer
Pawel Gajer
Philip Strandwitz
Phillip Hugenholtz
Pieter C Dorrestein
Purna Kashyap
Rachel Dutton
Rachel S. Park
Ramnik J. Xavier
Rob Knight
Robert R. Dunn
Robert H. Mills
Rosa Krajmalnik-Brown
Ruth Ley
Sarah M. Owens
Scott T. Kelley
Scott Klemmer
Sébastien Matamoros
Shyamal Peddada
Siavash Mirarab
Stefan Janssen
Stephanie Moorman
Susan Holmes
Tara Schwartz
Tifani W. Eshoo-Anton
Tim Vigers
Timothy Spector
Tomasz Kosciolek
Varykina G. Thackray
Vineet Pandey
Will Van Treuren
Xin Fang
Yingfeng Chen
Yoshiki Vázquez-Baeza
Zhenjiang Zech Xu
Alexander A. Aksenov
Alexey V. Melnik
Alan Jarmusch
Justin Geier
Pavel Pevzner
Dmitry Meleshko
Bahar Behsaz
Nicolai Reeve
Ricardo Silva
Qiyun Zhu
Evguenia Kopylova
Clarisse Marotz
Larry Smarr
Tanya Nguyen
Hosein Mohimani
Lingjing Jiang
Austin Swafford
Dominic Nguyen
Se Jin Song
Karenina Sanders
Rodolfo Antonio Salido Benitez
Arthur Cole Heale
Dilip V. Jeste
Tanya T. Nguyen
Brennan, Caitriona
Max Abramson
10.6084/m9.figshare.6131024.v1
https://figshare.com/articles/dataset/Unweighted_UniFrac_distances/6131024
The unweighted UniFrac distance (Lozupone and Knight AEM 2005) matrix of the 9511 fecal samples used in the American Gut paper. UniFrac was computed using Striped UniFrac (https://github.com/biocore/unifrac). Prior to execution of UniFrac, Deblur (Amir et al mSystems 2017) was run on the samples, all bloom sOTUs were removed (Amir et al mSystems 2017), and samples were rarefied to a depth of 1250 reads (Weiss et al Microbiome 2017). For the phylogeny, fragments were inserted using SEPP (Mirarab et al Pac Symp Biocomput 2012) into the Greengenes 13_5 99% OTU tree (McDonald et al ISME 2012).
2018-04-12 19:09:07
American Gut Project
Microbial Ecology