10.6084/m9.figshare.5936482.v1
Daniel McDonald
Daniel
McDonald
Adam Robbins-Pianka
Adam
Robbins-Pianka
Allison E. Mann
Allison E.
Mann
Alison Vrbanac
Alison
Vrbanac
Amnon Amir
Amnon
Amir
Angel Frazier
Angel
Frazier
Antonio Gonzalez
Antonio
Gonzalez
Anupriya Tripathi
Anupriya
Tripathi
Ashkaan K. Fahimipour
Ashkaan K.
Fahimipour
Caitriona Brennen
Caitriona
Brennen
Cameron Martino
Cameron
Martino
Carlito Lebrilla
Carlito
Lebrilla
Catherine Lozupone
Catherine
Lozupone
Cecil M. Lewis Jr.
Cecil
M. Lewis Jr.
Charles Raison
Charles
Raison
Chi Zhang
Chi
Zhang
Christian L. Lauber
Christian
L. Lauber
Christina Warinner
Christina
Warinner
Christopher A. Lowry
Christopher
A. Lowry
Chris Callewaert
Chris
Callewaert
Cinnamon Bloss
Cinnamon
Bloss
Curtis Huttenhower
Curtis
Huttenhower
Dan Knights
Dan
Knights
Dana Willner
Dana
Willner
Daniel McDonald
Daniel
McDonald
Daniela Domingos Galzerani
Daniela Domingos
Galzerani
David J. Gonzalez
David J.
Gonzalez
David A. Mills
David A.
Mills
Deepak Chopra
Deepak
Chopra
Dirk Gevers
Dirk
Gevers
Donna Berg-Lyons
Donna
Berg-Lyons
Dorothy D. Sears
Dorothy
D. Sears
Doug Wendel
Doug
Wendel
Elaine Wolfe
Elaine
Wolfe
Elijah Lovelace
Elijah
Lovelace
Embriette R. Hyde
Embriette
R. Hyde
Emily Pierce
Emily
Pierce
Emily TerAvest
Emily
TerAvest
Emmanuel Montassier
Emmanuel
Montassier
Evan Bolyen
Evan
Bolyen
Frederic D. Bushman
Frederic D.
Bushman
Gail Ackermann
Gail
Ackermann
Gary D. Wu
Gary
D. Wu
George M. Church
George M.
Church
Gholamali Rahnavard
Gholamali
Rahnavard
Gordon Saxe
Gordon
Saxe
Grant Gogul
Grant
Gogul
Gregory Humphrey
Gregory
Humphrey
Hannah D. Holscher
Hannah
D. Holscher
Ivo Ugrina
Ivo
Ugrina
J. Bruce German
J. Bruce
German
J. Gregory Caporaso
J.
Gregory Caporaso
Jack Gilbert
Jack
Gilbert
Jacob M. Wozniak
Jacob M.
Wozniak
Jacqueline Kerr
Jacqueline
Kerr
Jacques Ravel
Jacques
Ravel
James Gaffney
James
Gaffney
James D. Lewis
James
D. Lewis
James T. Morton
James T.
Morton
Jan S. Suchodolski
Jan S.
Suchodolski
Janet K. Jansson
Janet K.
Jansson
Jarrad T. Hampton-Marcell
Jarrad T.
Hampton-Marcell
Jason Bobe
Jason
Bobe
Jeff Leach
Jeff
Leach
Jeroen Raes
Jeroen
Raes
Jessica L. Green
Jessica
L. Green
Jessica L. Metcalf
Jessica L.
Metcalf
John H. Chase
John
H. Chase
Jonathan A. Eisen
Jonathan
A. Eisen
Jonathan Monk
Jonathan
Monk
Jose A. Navas-Molina
Jose A.
Navas-Molina
Jose C. Clemente
Jose
C. Clemente
Joseph Petrosino
Joseph
Petrosino
Joshua Ladau
Joshua
Ladau
Joshua Shorenstein
Joshua
Shorenstein
Julia Goodrich
Julia
Goodrich
Julia Gauglitz
Julia
Gauglitz
Julian Jacobs
Julian
Jacobs
Justine W. Debelius
Justine
W. Debelius
Karsten Zengler
Karsten
Zengler
Katherine S. Pollard
Katherine
S. Pollard
Kelly S. Swanson
Kelly S.
Swanson
Kim Lewis
Kim
Lewis
Kris Mayer
Kris
Mayer
Kyle Bittinger
Kyle
Bittinger
Lindsay DeRight Goldasich
Lindsay DeRight
Goldasich
Lindsay Dillon
Lindsay
Dillon
Livia S. Zaramela
Livia
S. Zaramela
Luke R. Thompson
Luke
R. Thompson
Lynn M. Schriml
Lynn
M. Schriml
Maria G. Dominguez-Bello
Maria G.
Dominguez-Bello
Marta M. Jankowska
Marta M.
Jankowska
Martin Blaser
Martin
Blaser
Matthew A. Jackson
Matthew A.
Jackson
Meg Pirrung
Meg
Pirrung
Michael Minson
Michael
Minson
Mike Kurisu
Mike
Kurisu
Nadim Ajami
Nadim
Ajami
Naseer Sangwan
Naseer
Sangwan
Neil R. Gottel
Neil R.
Gottel
Nicholas Chia
Nicholas
Chia
Noah Fierer
Noah
Fierer
Owen White
Owen
White
Patrice D. Cani
Patrice
D. Cani
Paul Wischmeyer
Paul
Wischmeyer
Pawel Gajer
Pawel
Gajer
Philip Strandwitz
Philip
Strandwitz
Phillip Hugenholtz
Phillip
Hugenholtz
Pieter C Dorrestein
Pieter C
Dorrestein
Purna Kashyap
Purna
Kashyap
Rachel Dutton
Rachel
Dutton
Rachel S. Park
Rachel S.
Park
Ramnik J. Xavier
Ramnik J.
Xavier
Rob Knight
Rob
Knight
Robert R. Dunn
Robert
R. Dunn
Robert H. Mills
Robert H.
Mills
Rosa Krajmalnik-Brown
Rosa
Krajmalnik-Brown
Ruth Ley
Ruth
Ley
Sarah M. Owens
Sarah
M. Owens
Scott T. Kelley
Scott
T. Kelley
Scott Klemmer
Scott
Klemmer
Sébastien Matamoros
Sébastien
Matamoros
Shyamal Peddada
Shyamal
Peddada
Siavash Mirarab
Siavash
Mirarab
Stefan Janssen
Stefan
Janssen
Stephanie Moorman
Stephanie
Moorman
Susan Holmes
Susan
Holmes
Tara Schwartz
Tara
Schwartz
Tifani W. Eshoo-Anton
Tifani W.
Eshoo-Anton
Tim Vigers
Tim
Vigers
Timothy Spector
Timothy
Spector
Tomasz Kosciolek
Tomasz
Kosciolek
Varykina G. Thackray
Varykina
G. Thackray
Vineet Pandey
Vineet
Pandey
Will Van Treuren
Will
Van Treuren
Xin Fang
Xin
Fang
Yingfeng Chen
Yingfeng
Chen
Yoshiki Vázquez-Baeza
Yoshiki
Vázquez-Baeza
Zhenjiang Zech Xu
Zhenjiang
Zech Xu
Alexander A. Aksenov
Alexander A.
Aksenov
Alexey V. Melnik
Alexey V.
Melnik
Alan Jarmusch
Alan
Jarmusch
Justin Geier
Justin
Geier
Pavel Pevzner
Pavel
Pevzner
Dmitry Meleshko
Dmitry
Meleshko
Bahar Behsaz
Bahar
Behsaz
Nicolai Reeve
Nicolai
Reeve
Ricardo Silva
Ricardo
Silva
Qiyun Zhu
Qiyun
Zhu
Evguenia Kopylova
Evguenia
Kopylova
Clarisse Marotz
Clarisse
Marotz
Larry Smarr
Larry
Smarr
Tanya Nguyen
Tanya
Nguyen
Hosein Mohimani
Hosein
Mohimani
Lingjing Jiang
Lingjing
Jiang
Austin Swafford
Austin
Swafford
Dominic Nguyen
Dominic
Nguyen
Se Jin Song
Se Jin
Song
Karenina Sanders
Karenina
Sanders
Rodolfo Antonio Salido Benitez
Rodolfo Antonio Salido
Benitez
Arthur Cole Heale
Arthur Cole
Heale
Dilip V. Jeste
Dilip
V. Jeste
Tanya T. Nguyen
Tanya T.
Nguyen
Brennan, Caitriona
Caitriona
Brennan
Max Abramson
Max
Abramson
movie_s2.mp4
figshare
2018
American Gut Project
Microbial Ecology
2018-02-28 23:33:36
Media
https://figshare.com/articles/media/movie_s2_mp4/5936482
Placing changes in the microbiome in the context of the American Gut. We accumulated samples over sequencing runs to demonstrate the structural consistency in the data. We demonstrate that while the ICU dataset (https://www.ncbi.nlm.nih.gov/pubmed/27602409) falls within the American Gut samples, they do not fall close to most samples at any of the body sites. We then highlight samples from the United Kingdom, Australia, the United States and other countries to show that nationality does not overcome the variation in body site. We then highlight the utility of the American Gut in meta-analysis by reproducing results from (https://www.ncbi.nlm.nih.gov/pubmed/20668239) and (https://www.ncbi.nlm.nih.gov/pubmed/23861384), using the AGP dataset as the context for dynamic microbiome changes instead of the HMP dataset. We show rapid, complete recovery of C. diff patients following fecal material transplantation and also contextualized the change in an infant gut over time until it settles into an adult state. This demonstrates the power of the American Gut dataset, both as a cohesive study and as a context for other investigations.