%0 Generic %A Watson-Haigh, Nathan %A Suchecki, Radoslaw %A de Oliveira Santos Garcia, Melissa %A Kalashyan, Elena %A Baumann, Ute %D 2018 %T Yitpi WGS vs IWGSC RefSeq v1.0 Genome Assembly %U https://adelaide.figshare.com/articles/dataset/Yitpi_WGS_vs_IWGSC_RefSeq_v1_0_Genome_Assembly/5848389 %R 10.4225/55/5a76e1a1b5dda %2 https://ndownloader.figshare.com/files/10384398 %2 https://ndownloader.figshare.com/files/10384248 %2 https://ndownloader.figshare.com/files/10384242 %2 https://ndownloader.figshare.com/files/10384239 %2 https://ndownloader.figshare.com/files/10384236 %2 https://ndownloader.figshare.com/files/10384233 %2 https://ndownloader.figshare.com/files/10384227 %2 https://ndownloader.figshare.com/files/10384224 %2 https://ndownloader.figshare.com/files/10384221 %2 https://ndownloader.figshare.com/files/10384218 %2 https://ndownloader.figshare.com/files/10384215 %2 https://ndownloader.figshare.com/files/10384212 %2 https://ndownloader.figshare.com/files/10384209 %2 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https://ndownloader.figshare.com/files/10383942 %2 https://ndownloader.figshare.com/files/10383945 %2 https://ndownloader.figshare.com/files/10383993 %2 https://ndownloader.figshare.com/files/10383984 %2 https://ndownloader.figshare.com/files/10383981 %2 https://ndownloader.figshare.com/files/10383978 %2 https://ndownloader.figshare.com/files/10383975 %2 https://ndownloader.figshare.com/files/10383972 %2 https://ndownloader.figshare.com/files/10383969 %2 https://ndownloader.figshare.com/files/10383966 %2 https://ndownloader.figshare.com/files/10383963 %2 https://ndownloader.figshare.com/files/10383960 %2 https://ndownloader.figshare.com/files/10383957 %2 https://ndownloader.figshare.com/files/10383954 %2 https://ndownloader.figshare.com/files/10383951 %2 https://ndownloader.figshare.com/files/10383948 %2 https://ndownloader.figshare.com/files/10383897 %K BAM %K VCF %K bigWig %K BioKanga %K wheat %K Yitpi %K IWGSC %K Bioinformatics Software %K Bioinformatics %K Genomics %X WGS reads of Yitpi (http://dx.doi.org/10.1111/j.1467-7652.2012.00717.x) were aligned against the IWGSC Triticum aestivum Chinese Spring RefSeq v1.0 genome assembly using BioKanga. These BAM files (.bam) and index files (.bam.bai) are provided together with a summary of read alignment coverage bigWig files (.bam.bw). SNP variants were called from these BAM files to generate VCF files (.bam.vcf.gz) and index files (.bam.vcf.gz.tbi) and are provided together with a summary of SNP density (SNPs per 10 kbp) bigWig files (.bam.vcf.bw). VCF files contain the following filter values and corresponding meaning: PASS = high quality (Q>=30) homozygous; Het = high quality (Q>=30) heterozygous; LowQualHom = low quality (Q<30) homozygous; LowQualHet = low quality (Q<30) heterozygous. Files are provided separately for each chromosome part. %I The University of Adelaide