TY - DATA T1 - Volcani-DD-1 WGS vs IWGSC RefSeq v1.0 Genome Assembly PY - 2018/02/04 AU - Nathan Watson-Haigh AU - Radoslaw Suchecki AU - Melissa de Oliveira Santos Garcia AU - Elena Kalashyan AU - Ute Baumann UR - https://adelaide.figshare.com/articles/dataset/Volcani-DD-1_WGS_vs_IWGSC_RefSeq_v1_0_Genome_Assembly/5848380 DO - 10.4225/55/5a76e2d8db65a L4 - https://ndownloader.figshare.com/files/10379028 L4 - https://ndownloader.figshare.com/files/10378971 L4 - https://ndownloader.figshare.com/files/10378968 L4 - https://ndownloader.figshare.com/files/10378965 L4 - https://ndownloader.figshare.com/files/10378962 L4 - https://ndownloader.figshare.com/files/10378959 L4 - https://ndownloader.figshare.com/files/10378956 L4 - https://ndownloader.figshare.com/files/10378953 L4 - https://ndownloader.figshare.com/files/10378950 L4 - https://ndownloader.figshare.com/files/10378947 L4 - https://ndownloader.figshare.com/files/10378944 L4 - https://ndownloader.figshare.com/files/10378941 L4 - https://ndownloader.figshare.com/files/10378938 L4 - 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https://ndownloader.figshare.com/files/10378617 L4 - https://ndownloader.figshare.com/files/10378620 L4 - https://ndownloader.figshare.com/files/10378692 L4 - https://ndownloader.figshare.com/files/10378689 L4 - https://ndownloader.figshare.com/files/10378686 L4 - https://ndownloader.figshare.com/files/10378683 L4 - https://ndownloader.figshare.com/files/10378680 L4 - https://ndownloader.figshare.com/files/10378677 L4 - https://ndownloader.figshare.com/files/10378674 L4 - https://ndownloader.figshare.com/files/10378671 L4 - https://ndownloader.figshare.com/files/10378668 L4 - https://ndownloader.figshare.com/files/10378635 L4 - https://ndownloader.figshare.com/files/10378632 L4 - https://ndownloader.figshare.com/files/10378629 L4 - https://ndownloader.figshare.com/files/10378626 L4 - https://ndownloader.figshare.com/files/10378623 L4 - https://ndownloader.figshare.com/files/10378551 KW - BAM KW - VCF KW - bigWig KW - BioKanga KW - wheat KW - Volcani-DD-1 KW - IWGSC KW - Bioinformatics Software KW - Bioinformatics KW - Genomics N2 - WGS reads of Volcani-DD-1 (http://dx.doi.org/10.1111/j.1467-7652.2012.00717.x) were aligned against the IWGSC Triticum aestivum Chinese Spring RefSeq v1.0 genome assembly using BioKanga. These BAM files (.bam) and index files (.bam.bai) are provided together with a summary of read alignment coverage bigWig files (.bam.bw). SNP variants were called from these BAM files to generate VCF files (.bam.vcf.gz) and index files (.bam.vcf.gz.tbi) and are provided together with a summary of SNP density (SNPs per 10 kbp) bigWig files (.bam.vcf.bw). VCF files contain the following filter values and corresponding meaning: PASS = high quality (Q>=30) homozygous; Het = high quality (Q>=30) heterozygous; LowQualHom = low quality (Q<30) homozygous; LowQualHet = low quality (Q<30) heterozygous. Files are provided separately for each chromosome part. ER -