%0 Generic %A Mordret, Solenn %A Piredda, Roberta %A Vaulot, Daniel %A Montresor, Marina %A Kooistra, Wiebe H.C.F. %A Sarno, Diana %D 2018 %T DinoREF: a curated dinoflagellate (Dinophyceae) reference database for the 18S rRNA gene %U https://figshare.com/articles/dataset/DinoREF_a_curated_dinoflagellate_Dinophyceae_reference_database_for_the_18S_rRNA_gene/5568454 %R 10.6084/m9.figshare.5568454.v1 %2 https://ndownloader.figshare.com/files/10468093 %2 https://ndownloader.figshare.com/files/10468111 %2 https://ndownloader.figshare.com/files/10468114 %2 https://ndownloader.figshare.com/files/10468117 %2 https://ndownloader.figshare.com/files/10468120 %2 https://ndownloader.figshare.com/files/10468123 %2 https://ndownloader.figshare.com/files/10468126 %2 https://ndownloader.figshare.com/files/10468132 %K Dinoflagellates %K sequence database %K 18S rRNA gene %K V4 region %K diversity %K phylogeny %K Microbial Ecology %K Microbiology %K Genetics %K Molecular Biology %K Evolutionary Biology %K Molecular Evolution %K Bioinformatics %K Marine Biology %X

Mordret, S., Piredda, R., Vaulot, D., Montresor, M., Kooistra, H. C. F. & Sarno, D. (under revision 2018). DinoREF: a curated dinoflagellate (Dinophyceae) reference database for the 18S rRNA gene. Molecular Ecology Resources.


Supplementary Material 1

List of 18S sequences included in DinoREF including annotations extracted from GenBank and literature sources (see “read-me” for details on metadata).

Supplementary Material 2

Fasta file (.fast) of sequences used to build DinoREF including the GenBank Accession number of each sequence.

Supplementary Material 3

DinoREF taxonomy file 1 (.taxonomy) with the taxonomy provided by GenBank for each sequence included in the database.

Supplementary Material 4

DinoREF taxonomy file 2 (.taxonomy) with the 8-level taxonomy for each sequence included in the database.

Supplementary Material 5

DinoREF taxonomy file 3 (.taxonomy) with the classification by Superclades for each sequence included in the database.

Supplementary Material 6

List of V4 unique sequences. When multiple 18S sequences share the same V4 region, the sequences IDs (GenBank # and species name) are reported, one after the other, in the same row.

Supplementary Material 7

List of OTUs_98%. When multiple V4 sequences cluster in the same OTU at 98%, the sequences IDs (GenBank # and species name) are reported, one after the other, in the same row.

Supplementary Material 8

Fasta file (.fasta) of sequences of early branching dinoflagellates.

%I figshare