%0 Figure %A Kong, Sing-Guan %A Fan, Wen-Lang %A Chen, Hong-Da %A Hsu, Zi-Ting %A Zhou, Nengji %A Zheng, Bo %A Lee, Hoong-Chien %D 2009 %T Type-specificity of -matrix plots. %U https://plos.figshare.com/articles/figure/_Type_specificity_of_matrix_plots_/547692 %R 10.1371/journal.pone.0007553.g006 %2 https://ndownloader.figshare.com/files/877254 %K biophysics/theory and simulation %K computational biology/comparative sequence analysis %K computational biology/genomics %K computational biology/macromolecular sequence analysis %K evolutionary biology/bioinformatics %K evolutionary biology/evolutionary and comparative genetics %K evolutionary biology/genomics %X

Statistics and P-values of distributions of for 4-mers in the four type-representative chromosomes. The “rev”, “comp”, and “inv” sets of 's are the terms for conjugate-pairs (,) contributing to , , , and , respectively (Eq. (1)). The numbers of r, c, and i-conjugate pairs of 4-mers are 120, 128, and 120, respectively. The “whole” set consists of 1000 randomly selected pairs from a total of 8484, where in each pair both 4-mers belong to the same -set (Methods) but are otherwise unrelated. In “lead” and “lag”, pairs are -conjugates from the lead-strand and lag-strand, respectively.

%I PLOS ONE