10.6084/m9.figshare.5202457.v2
Joe Win
Joe
Win
Sophien Kamoun
Sophien
Kamoun
Transcriptome assembly of RNA-Seq data from field samples collected during wheat blast epidemic in Bangladesh 2016
figshare
2017
open wheat blast
wheat blast fungus
Magnaporthe oryzae
Trinity assembly
RNA-Seq
Bioinformatics
Plant Pathology
2017-07-13 18:07:46
Dataset
https://figshare.com/articles/dataset/Bangladesh_Field_RNA-Seq_samples_2016_-_Transcript_Assembly/5202457
In 2016, wheat fields in Bangladesh were infected by wheat blast fungus (<i>Magnaporthe oryzae</i>) for the first time. The fungus spread quickly thoroughout the country and threatened other wheat growing areas in neighbouring countries. Islam <i>et al </i>(BMC Biology 2016 14:84<strong>, </strong>DOI<strong>: </strong>10.1186/s12915-016-0309-7) collected infected wheat samples, extracted RNA, and obtained short reads by Illumina RNA-Seq technology. Here, we report assemby of these short reads using Trinity v 2.0.6.<br>