10.17045/sthlmuni.5178415.v1
Daniel Lundin
Daniel
Lundin
NrdJ phylogeny
Stockholm University
2017
Ribonucleotide reductase class II
RNR class II
NrdJ
Phylogeny
Bioinformatics
Computational Biology
Enzymes
Evolutionary Biology
2017-07-06 14:25:14
Dataset
https://su.figshare.com/articles/dataset/NrdJ_phylogeny/5178415
Maximum likelihood phylogeny (RAxML; Stamatakis 2014) of representatives of 75% identity clusters of the full diversity of class II ribonucleotide reductases (NrdJ). Reliable positions in Probcons (Do et al. 2005) alignment selected with the BMGE algorithm using the BLOSUM30 matrix (Criscuolo & Gribaldo 2010) PROTGAMMAAUTO model.<br><br>File can be opened in Dendroscope (http://dendroscope.org/) and other tree viewers.