TY - DATA T1 - Grayling draft genome dataset PY - 2017/06/22 AU - Srinidhi Varadharajan AU - Lex Nederbragt UR - https://figshare.com/articles/dataset/Grayling_draft_genome_dataset/5135257 DO - 10.6084/m9.figshare.5135257.v1 L4 - https://ndownloader.figshare.com/files/8731342 L4 - https://ndownloader.figshare.com/files/8731375 L4 - https://ndownloader.figshare.com/files/8731378 L4 - https://ndownloader.figshare.com/files/8731381 L4 - https://ndownloader.figshare.com/files/8731417 L4 - https://ndownloader.figshare.com/files/8731420 L4 - https://ndownloader.figshare.com/files/8731429 L4 - https://ndownloader.figshare.com/files/8731432 L4 - https://ndownloader.figshare.com/files/8731435 L4 - https://ndownloader.figshare.com/files/8731438 L4 - https://ndownloader.figshare.com/files/8731450 L4 - https://ndownloader.figshare.com/files/8731453 KW - grayling Thymallus thymallus KW - grayling draft genome assembly KW - transcriptome KW - Genomics N2 - ###### DescriptionTthymallus_scaffolds.fasta - Assembled scaffold sequencesTthymallus_RepeatLibrary_deNovo.fasta - De novo repeat library sequencesTthymallus_transcriptome_DeNovo.fasta - De novo transcriptome assembly using Trinity (followed by RSEM based filtering)Tthymallus_transcriptome_ReferenceBased.fasta - Reference-based transcriptome using STAR-Cufflinks-transdecoder pipeline (followed by filtering based on homology to known proteins from zebrafish and stickleback proteins.Tthymallus_ScaffoldAnnotation.gff3 - MAKER pipeline based annotation for the scaffolds.Tthymallus_proteins.fasta - Grayling protein sequences used for inferring orthologous groups (based on MAKER annotations)Tthymallus_maker_fullOutput.gff - Full output from MAKERTthymallus_CPMcounts.txt - Expression counts for graylingOrthologousGroups.txt - Inferred orthologous groups using Orthofinder ER -