10.6084/m9.figshare.5135257.v1 Srinidhi Varadharajan Srinidhi Varadharajan Lex Nederbragt Lex Nederbragt Grayling draft genome dataset figshare 2017 grayling Thymallus thymallus grayling draft genome assembly transcriptome Genomics 2017-06-22 10:52:25 Dataset https://figshare.com/articles/dataset/Grayling_draft_genome_dataset/5135257 <div>###### Description</div><div><br></div><div><br></div><div>Tthymallus_scaffolds.fasta - Assembled scaffold sequences</div><div><br></div><div>Tthymallus_RepeatLibrary_deNovo.fasta - De novo repeat library sequences</div><div><br></div><div>Tthymallus_transcriptome_DeNovo.fasta - De novo transcriptome assembly using Trinity (followed by RSEM based filtering)</div><div><br></div><div>Tthymallus_transcriptome_ReferenceBased.fasta - Reference-based transcriptome using STAR-Cufflinks-transdecoder pipeline (followed by filtering based on homology to known proteins from zebrafish and stickleback proteins.</div><div><br></div><div>Tthymallus_ScaffoldAnnotation.gff3 - MAKER pipeline based annotation for the scaffolds.</div><div><br></div><div>Tthymallus_proteins.fasta - Grayling protein sequences used for inferring orthologous groups (based on MAKER annotations)</div><div><br></div><div>Tthymallus_maker_fullOutput.gff - Full output from MAKER</div><div><br></div><div>Tthymallus_CPMcounts.txt - Expression counts for grayling</div><div><br></div><div>OrthologousGroups.txt - Inferred orthologous groups using Orthofinder</div><div><br></div><div><br></div><div><br></div>