KEGG pathway enrichment analysis of differentially expressed genes between S28 and S6.
Tangjian Peng
Liyuan Ma
Xue Feng
Jiemeng Tao
Meihua Nan
Yuandong Liu
Jiaokun Li
Li Shen
Xueling Wu
Runlan Yu
Xueduan Liu
Guanzhou Qiu
Weimin Zeng
10.1371/journal.pone.0178008.g004
https://plos.figshare.com/articles/figure/KEGG_pathway_enrichment_analysis_of_differentially_expressed_genes_between_S28_and_S6_/5026514
<p>Enrichment factor is calculated as followed:
</p><p></p>
Gene hits is the number of hits in the selected pathway; Gene<sub>pathway</sub> is the number of genes in the selected pathway of KEGG background; Hits<sub>total</sub> represents the number of total hits in all pathways; Gene <sub>total</sub> is the number of total genes in all pathways of KEGG background.<p></p>
2017-05-19 17:40:08
RNA transcript counts
III-B
bacterium
Genomic
strain YL 15
transcriptomic
adaptation mechanisms
e.g
UV
DNA repair enzymes
temperature acid mine drainage
acid mine drainage
strategy
type
synthesis
Yulong copper mine
Gene
I-F
bacterioferritin Dps gene
protein
alpine acid mine drainage environment
Acidithiobacillus ferrivorans strain YL 15
CRISPR
alpine acid mine drainage Acidithiobacillus ferrivorans
stress
strain YL 15.
analysis