10.6084/m9.figshare.4960406.v2
Ondřej Mikula
Ondřej
Mikula
R code for species distribution modeling in "Phylogeography of a widespread sub-Saharan murid rodent Aethomys chrysophilus: the role of geographic barriers and paleoclimate in the Zambezian bioregion."
figshare
2017
Aethomys chrysophilus
Aethomys ineptus
phylogeography
Zambezian bioregion
Plio-Pleistocene climate changes
Zoology
2017-06-19 23:31:01
Dataset
https://figshare.com/articles/dataset/R_code_for_species_distribution_modeling_in_Phylogeography_of_a_widespread_sub-Saharan_murid_rodent_Aethomys_chrysophilus_the_role_of_geographic_barriers_and_paleoclimate_in_the_Zambezian_bioregion_/4960406
Zipped R code and necessary data for MaxEnt species distribution modeling used in "Phylogeography of a widespread sub-Saharan murid rodent Aethomys chrysophilus: the role of geographic barriers and paleoclimate in the Zambezian bioregion." It covers loading of data, model selection, fitting and prediction as well as assessment of variable importances. Included is also the code for plotting of predicted relative occurrence rates (ROR) and for "double density plots" confronting distribution of variable values across background with its ROR-weighted version.