Example CellProfiler pipeline for the image analysis of the lung cancer cell bioreactor cultures
Emma Jane Davies
Meng Dong
Katja Maria Närhi
Sami Blom
Catarina Brito
ralph graeser
Suzana Vidic
Annika Osswald
Erwin Boghaert
Ronald De Hoogt
Marta F Estrada
Michael Barbier
Vítor Espirito Santo
Kjersti Gjerde
Hanneke J.A.A. van Zoggel
Yolanda Chong
10.6084/m9.figshare.c.3727411_D1.v1
https://springernature.figshare.com/articles/dataset/Example_CellProfiler_pipeline_for_the_image_analysis_of_the_lung_cancer_cell_bioreactor_cultures/4867265
Example CellProfiler pipeline for the image analysis of the breast cancer cell (MCF7) bioreactor culture samples (also uploaded to this figShare record under "ZIP-file of fluorescent (widefield) images of bioreactor breast cancer cell cultures"). To use this pipeline it should be opened with CellProfiler and the file paths in the first module "Images" (which loads the input images) should be adapted to reflect the location of the images, as well as the output paths in the modules "ExportToSpreadSheet" and "SaveImages".
2017-11-20 10:42:38
Fluorescent Labels
metadata specifications
compound treatment
3D cell cultures
widefield fluorescence microscopy images
image analysis pipeline