10.6084/m9.figshare.4640719.v1
Irene Omedo
Irene
Omedo
Dataset 2: Sequenom assay design information.
Wellcome Open Research
2017
Plasmodium falciparum
malaria
parasite mixing
population structure
micro-epidemiological
targeted control
principal component analysis
genotyping
Biological Sciences not elsewhere classified
2017-02-14 11:10:12
Dataset
https://wellcomeopenresearch.figshare.com/articles/dataset/Dataset_2_Sequenom_assay_design_information_/4640719
Data includes the locus and IPLEX specific primers used in the sequenom reaction to amplify and type the SNPs of interest. Gene product, gene product name; Gene_symbol, gene name; Chromosome, chromosome location of gene; SNP position on chromosome, SNP site; reference allele, 3D7 reference allele; alternative allele, alternative allele; sequence, 3D7 reference sequence spanning the SNP site; first_pcrp, first PCR primer sequence; second_pcrp, second PCR primer sequence; extension_primer, IPLEX extension primer sequence; extension1_call, IPLEX primer with extended SNP; extension1_mass, Mass of the extended IPLEX primer; extension1_sequence, sequence of extended IPLEX primer; extension2_call= IPLEX primer with alternative extended allele; extension2_mass, Mass of the extended IPLEX primer with alternative allele; extension2_sequence, sequence of extended IPLEX primer with alternative allele. <br>