10.6084/m9.figshare.4577953.v1
Anony Moose
Anony
Moose
POCP calculation for two genomes
figshare
2017
bash script
Bioinformatics Software
2017-01-21 20:16:46
Software
https://figshare.com/articles/software/POCP_calculation_for_two_genomes/4577953
This script takes two FASTA files of predicted gene sequences that have been converted to amino acids and calculates the POCP value (Qin et al. 2014; Journal of Bacteriology). The script also takes the number of CPUs to be used for BLASTing as a third parameter. The '_HH' is included at the end of all intermediate files to guarantee that the file names are unique, ensuring that existing files do not get overwritten.<br><br>EXAMPLE: ./POCP.sh genes_A.faa genes_B.faa 10