10.6084/m9.figshare.4560862.v2
Multicellgenome Lab
Multicellgenome
Lab
Guifré Torruella
Guifré
Torruella
Transcriptome - Nutomonas longa
figshare
2017
Nutomonas longa
transcriptome
origin of animals
origin of multicellularity
unicellular relatives of animals
Evolutionary Biology
Microbiology
2017-03-02 08:43:40
Dataset
https://figshare.com/articles/dataset/Transcriptome_-_Nutomonas_longa/4560862
<div><i>Nutomonas longa</i>'s transcriptome<i> </i>(formerly known as <i>Planomonas carolina)</i><br></div><div><br></div><div>- clean.fasta: Assembly cleaned from cross-contamination of other
species multiplexed (Corallochytrium limacisporum India, Ichthyophonus
hoferi and Sphaerothecum destruens) after applying CroCo V0.1.1 (Simion et al. in prep).</div><div><br></div><div>- Assembly in-home BGI to obtain Unigene (contigs)</div><div>- ORF prediction using TransDecoder (Trinity plugin) and PfamScan to obtain coding sequences (CDS files) from transcripts (mRNA)</div><div>- Protein translations are included (pep)</div><div><br></div><div><strong>Guifré Torruella, Alex de Mendoza, Xavier Grau-Bové, Meritxell Antó, </strong>Mark A. Chaplin<strong>, Javier del Campo, </strong>Laura Eme, Gregorio Pérez-Cordón, Christopher M. Whipps, Krista M. Nichols, Richard Paley, Andrew J. Roger, Ariadna Sitjà-Bobadilla, Stuart Donachie,<strong> and Iñaki Ruiz-Trillo. </strong>(2015)<br><em>Phylogenomics reveals convergent evolution of lifestyles in close relatives of animals and fungi.</em><br><a href="http://authors.elsevier.com/a/1Rl0J3QW8RZw9k" target="_blank"><strong><em>Current Biology </em></strong>25(18):2404-10.</a><br></div><div><br></div><div>www.multicellgenome.com</div>