Additional file 9: of Regulation of constitutive and alternative mRNA splicing across the human transcriptome by PRPF8 is determined by 5′ splice site strength
Vihandha Wickramasinghe
Mar Gonzàlez-Porta
David Perera
Arthur Bartolozzi
Christopher Sibley
Martina Hallegger
Jernej Ule
John Marioni
Ashok Venkitaraman
10.6084/m9.figshare.c.3643007_D3.v1
https://springernature.figshare.com/articles/journal_contribution/Additional_file_9_of_Regulation_of_constitutive_and_alternative_mRNA_splicing_across_the_human_transcriptome_by_PRPF8_is_determined_by_5_splice_site_strength/4464092
Transcription initiation is similar in control siRNA-treated and PRPF8-depleted cells. a Delay between detection of the unspliced nascent transcript and the partially spliced transcript for UBE2R2 is similar in both PRPF8-depleted and control siRNA-treated cells. Kinetics of transcription and splicing recovery for UBE2R2, a gene whose splicing was unaffected by PRPF8 depletion as determined in our RNA-sequencing data, following release from drug-induced transcriptional arrest were measured in control siRNA-treated and PRPF8-depleted cells in a similar fashion to that shown in Fig. 8d. b Transcription of the first exon–intron junction of the four target genes following release from DRB in PRPF8-depleted and control siRNA-treated cells was measured. Primer pairs used span exon 1: intron 1 and thus measure transcription initiation following release from drug-induced transcriptional arrest. (PDF 198 kb)
2015-09-21 05:00:00
DRB
UBE 2R
PRPF 8 depletion
control siRNA-treated
Fig . 8d b Transcription
control siRNA-treated cells
PRPF 8-depleted
drug-induced transcriptional arrest
PDF 198 kb
measure transcription initiation
PRPF 8-depleted cells
release