%0 Generic %A Hancock, Penelope %D 2016 %T Hancock, P.A., White, V.L., Ritchie, S.A.,Hoffmann, A.A. and Godfray, H.C.J. 2016 Predicting Wolbachia invasion dynamics in Aedes aegypti populations using models of density-dependent demographic traits. BMC Biology. C++ computer code for implementing the population dynamic model described in Hancock et al. 2016 BMC Biology %U https://figshare.com/articles/dataset/Hancock_P_A_White_V_L_Ritchie_S_A_Hoffmann_A_A_and_Godfray_H_C_J_2016_Predicting_Wolbachia_invasion_dynamics_in_Aedes_aegypti_populations_using_models_of_density-dependent_demographic_traits_BMC_Biology_C_computer_code_for_implementing_the_population_dyna/3980472 %R 10.6084/m9.figshare.3980472.v1 %2 https://ndownloader.figshare.com/files/6328368 %2 https://ndownloader.figshare.com/files/6328370 %2 https://ndownloader.figshare.com/files/6328372 %2 https://ndownloader.figshare.com/files/6328374 %2 https://ndownloader.figshare.com/files/6328376 %2 https://ndownloader.figshare.com/files/6328378 %2 https://ndownloader.figshare.com/files/6328380 %2 https://ndownloader.figshare.com/files/6328382 %2 https://ndownloader.figshare.com/files/6328384 %2 https://ndownloader.figshare.com/files/6328386 %2 https://ndownloader.figshare.com/files/6328388 %2 https://ndownloader.figshare.com/files/6328390 %2 https://ndownloader.figshare.com/files/6328392 %2 https://ndownloader.figshare.com/files/6328394 %2 https://ndownloader.figshare.com/files/6328396 %2 https://ndownloader.figshare.com/files/6328398 %2 https://ndownloader.figshare.com/files/6328400 %K wolbachia %K zika %K mosquito %K aedes aegypti %K dengue %K Bayesian statistical model %K invasion dynamics %K vector-borne disease %K fitness components %K Computational Biology %K Host-Parasite Interactions %K Population Ecology %X
gyp_sim.cpp (version 04/10/2016) was developed by Dr Penelope A. Hancock
gyp_sim.cpp comprises C++ code for implementing the model
of mosquito-Wolbachia dynamics developed in Hancock et al. 2016,
"Predicting Wolbachia invasion dynamics in Aedes aegypti populations using
models of density-dependent demographic traits", BMC Biology.

To run gyp_sim use the command gyp_sim.exe
The file gyp_sim_inits.txt contains the following inputs:

Cohort_means.txt (a file for storing the mean development times of uninfected larvae in each cohort)
Cohort_means_wolb.txt (a file for storing the mean development times of infected larvae in each cohort)
Cohort_stds.txt (a file for storing the standard deviations of the development times of uninfected larvae in each cohort)
Cohort_stds_wolb.txt (a file for storing the standard deviations of the development times of infected larvae in each cohort)
mu_p.txt (a file for storing the number of uninfected pupae that eclose on each day)
L_file.txt (a file for storing the number of uninfected larvae present on each day)
A_file.txt (a file for storing the number of uninfected adults present on each day)
mu_p_wolb.txt (a file for storing the number of infected pupae that eclose on each day)
L_wolb_file.txt (a file for storing the number of infected larvae present on each day)
A_wolb_file.txt (a file for storing the number of infected adults present on each day)
FreqA2_file.txt (a file for storing the Wolbachia frequency on the final day of release)
lambda.txt (a file for storing the per-capita female fecundity at the time that each cohort is hatched)
release_size.txt (a file for storing the size of each Wolbachia release)
700 (the day of the first release)
0.1 (additional density-INdependent daily mortality experienced by adults In the field environment)
0.1 (additional density-INdependent daily mortality experienced by larvae in the field environment)

%I figshare