10.6084/m9.figshare.3561882.v1
Chris H. Wilson
Chris H.
Wilson
T. Trevor Caughlin
T.
Trevor Caughlin
David J. Civitello
David J.
Civitello
S. Luke Flory
S. Luke
Flory
Supplement 1. R script files and data from both the field introduction and the mesocosm experiment to execute the models described in the manuscript and in Appendix E.
Wiley
2016
plant demography
Microstegium vimineum
Bayesian hierarchical models
seed production
fecundity
species distribution models
scaling up
mechanistic models
invasive species
stiltgrass
ecological niche
Environmental Science
Ecology
2016-08-10 08:55:24
Dataset
https://wiley.figshare.com/articles/dataset/Supplement_1_R_script_files_and_data_from_both_the_field_introduction_and_the_mesocosm_experiment_to_execute_the_models_described_in_the_manuscript_and_in_Appendix_E_/3561882
<h2>File List</h2><div>
<p><a href="Gamma_Negbin_Fecund.R">Gamma_Negbin_Fecund.R</a> (MD5: 7cd8437e8cd555f777499ef6e3bc279e) -- # R code for fecundity predictions</p>
<p><a href="NegBinFecund.R">NegBinFecund.R</a> (MD5: fd282a2e324e20d7529bf51d2d2e14ef) -- # R code for seed model</p>
<p><a href="Gamma_Biomass.R">Gamma_Biomass.R</a> (MD5: 5926e4126625a807b86ebf3b48aa1b93) -- # R code for biomass model</p>
<p><a href="generalBAYESIANcode.R">generalBAYESIANcode.R</a> (MD5: bce9894d372872da18a3ee5305f571f5) -- # R code for functions used in above code</p>
<p><a href="garden.csv">garden.csv</a> (MD5: 19d443db46af62e515e38ad07d8ee499) -- # Field introduction data</p>
<p><a href="light_exp_seed.csv">light_exp_seed.csv</a> (MD5: ac8be1d03af3befc0e1f32e8c5311af8) -- # Mesocosm data</p>
</div><h2>Description</h2><div>
<p>These files are provided to assist in reproduction of our modeling results using the statistical package R. The first supplement (Gamma_Negbin_Fecund) contains R code that jointly samples from the two data sets (garden.csv and light_exp_seed.csv) in order to create predictions of plant fecundity in the field. The hierarchical biomass model (Gamma_Biomass.R) and the seed production model (NegBinFecund.R) are also included separately.
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