Examples of gapped extension on a GPU.
Shuji Suzuki
Masanori Kakuta
Takashi Ishida
Yutaka Akiyama
10.1371/journal.pone.0157338.g006
https://plos.figshare.com/articles/figure/Examples_of_gapped_extension_on_a_GPU_/3510572
<p>A) An example of accesses for sequence data in GHOSTZ. B) An example of gapped extension with the short loop.</p>
2016-08-02 17:30:01
evaluation test
database size
1 GPU
metagenomic data
protein sequences
Database Subsequence Clustering Sequence homology searches
optimized memory access
GPU calculations
GHOSTZ
3 GPUs
computation time
12 CPU threads
Sequence Homology Searches
graphics processing units
metagenomic analysis
homology search algorithm