10.1371/journal.pone.0154645.g005
Vinay K. Kartha
Vinay
K. Kartha
Lukasz Stawski
Lukasz
Stawski
Rong Han
Rong
Han
Paul Haines
Paul
Haines
George Gallagher
George
Gallagher
Vikki Noonan
Vikki
Noonan
Maria Kukuruzinska
Maria
Kukuruzinska
Stefano Monti
Stefano
Monti
Maria Trojanowska
Maria
Trojanowska
PDGFRβ Is a Novel Marker of Stromal Activation in Oral Squamous Cell Carcinomas - Fig 5
Public Library of Science
2016
cell carcinoma
OSCC
reference collagen expression
3A
CAF markers
cancer genome atlas
PDGFR
tumor
Oral Squamous Cell Carcinomas Carcinoma
fibroblast surface markers
TCGA cancer datasets
candidate CAF markers
novel approach
collagens COL 1A COL 1A
11 cancer types
2016-04-29 08:24:26
Figure
https://plos.figshare.com/articles/figure/PDGFR_Is_a_Novel_Marker_of_Stromal_Activation_in_Oral_Squamous_Cell_Carcinomas_-_Fig_5/3212737
<p>Pan-cancer NN analysis highlights PDGFRβ as a potential CAF marker in multiple cancer types A. Heatmap of average pairwise Kolmogorov-Smirnoff (KS) D statistics using the top 50 genes in the collagen NN cancer analysis of each of 11 cancer types. <b>B</b>. Venn diagram of top 50 genes in collagen NN ranked list within the five most closely related cancers (based on the average KS D statistic; Fig 5A). Core overlap has 11 genes, which includes PDGFRβ, highlighted in red. ACC: Adrenocortical carcinoma; BLCA: Bladder urothelial carcinoma; COAD: Colon adenocarcinoma; KIRC: Kidney renal clear cell carcinoma; LAML: Acute myeloid leukemia; LIHC: Liver hepatocellular carcinoma; LUAD: Lung adenocarcinoma; LUSC: Lung squamous cell carcinoma; PAAD: Pancreatic adenocarcinoma; PRAD: Prostate adenocarcinoma.</p>