10.1371/journal.pone.0154645.g005 Vinay K. Kartha Vinay K. Kartha Lukasz Stawski Lukasz Stawski Rong Han Rong Han Paul Haines Paul Haines George Gallagher George Gallagher Vikki Noonan Vikki Noonan Maria Kukuruzinska Maria Kukuruzinska Stefano Monti Stefano Monti Maria Trojanowska Maria Trojanowska PDGFRβ Is a Novel Marker of Stromal Activation in Oral Squamous Cell Carcinomas - Fig 5 Public Library of Science 2016 cell carcinoma OSCC reference collagen expression 3A CAF markers cancer genome atlas PDGFR tumor Oral Squamous Cell Carcinomas Carcinoma fibroblast surface markers TCGA cancer datasets candidate CAF markers novel approach collagens COL 1A COL 1A 11 cancer types 2016-04-29 08:24:26 Figure https://plos.figshare.com/articles/figure/PDGFR_Is_a_Novel_Marker_of_Stromal_Activation_in_Oral_Squamous_Cell_Carcinomas_-_Fig_5/3212737 <p>Pan-cancer NN analysis highlights PDGFRβ as a potential CAF marker in multiple cancer types A. Heatmap of average pairwise Kolmogorov-Smirnoff (KS) D statistics using the top 50 genes in the collagen NN cancer analysis of each of 11 cancer types. <b>B</b>. Venn diagram of top 50 genes in collagen NN ranked list within the five most closely related cancers (based on the average KS D statistic; Fig 5A). Core overlap has 11 genes, which includes PDGFRβ, highlighted in red. ACC: Adrenocortical carcinoma; BLCA: Bladder urothelial carcinoma; COAD: Colon adenocarcinoma; KIRC: Kidney renal clear cell carcinoma; LAML: Acute myeloid leukemia; LIHC: Liver hepatocellular carcinoma; LUAD: Lung adenocarcinoma; LUSC: Lung squamous cell carcinoma; PAAD: Pancreatic adenocarcinoma; PRAD: Prostate adenocarcinoma.</p>