Declaring a tuberculosis outbreak over with genomic epidemiology Hollie-Ann Hatherell Xavier Didelot Sue L. Pollock Patrick Tang Anamaria Crisan James C. Johnston Caroline Colijn Jennifer Gardy 10.6084/m9.figshare.3153280.v1 https://microbiology.figshare.com/articles/dataset/Declaring_a_tuberculosis_outbreak_over_with_genomic_epidemiology/3153280 Text file commands used in reference alignment and variant calling and fasta file of the final dataset of variants as published in<i> Microbial Genomics </i>in the following article: 'Declaring a tuberculosis outbreak over with genomic epidemiology' 2016-04-12 16:18:44 tuberculosis transmission genomic epidemiology Phylogenetics Microbiology