TY - DATA T1 - Celiac Subsequence Matrix. PY - 2016/01/29 AU - Rok Seon Choung AU - Eric V. Marietta AU - Carol T. Van Dyke AU - Tricia L. Brantner AU - John Rajasekaran AU - Pankaj J. Pasricha AU - Tianhao Wang AU - Kang Bei AU - Karthik Krishna AU - Hari K. Krishnamurthy AU - Melissa R. Snyder AU - Vasanth Jayaraman AU - Joseph A. Murray UR - https://plos.figshare.com/articles/figure/Celiac_Subsequence_Matrix_/3028621 DO - 10.1371/journal.pone.0147777.g005 L4 - https://ndownloader.figshare.com/files/4731157 KW - sequence KW - epitope sets KW - peptide screening programs KW - mer KW - novel microarray method KW - Peptide Microarrays BackgroundMost antibodies KW - gliadin N2 - The 3-mer subsequences with maximum occurrences among sequences with high sensitivity and specificity for among IgG and IgA reactivity were determined, and the best combinations of subsequences were plotted as a matrix table. The nine 3-mers with the highest score were combined in each possible iteration of two 3-mers to form 81 6-mer sequences, with N-terminal sub-sequences listed in the column, and the C-terminal sub-sequences listed in the row. A) IgG 3-mer subsequences, maximum occurrences. B) IgA 3-mer subsequences, maximum occurrences. % implies any number of amino acid(s) present prior to the subsequence portion of the sequence. For example, ‘%QPE’ could be WALLTYQPE while ‘%QPE%’ could be WAQPELLTY. ER -