%0 Figure %A J. Gaffney, Daniel %A McVicker, Graham %A A. Pai, Athma %A N. Fondufe-Mittendorf, Yvonne %A Lewellen, Noah %A Michelini, Katelyn %A Widom, Jonathan %A Gilad, Yoav %A K. Pritchard, Jonathan %D 2012 %T Arrays of positioned nucleosomes flanking transcription factor (TF) binding sites. %U https://plos.figshare.com/articles/figure/_Arrays_of_positioned_nucleosomes_flanking_transcription_factor_TF_binding_sites_/212292 %R 10.1371/journal.pgen.1003036.g004 %2 https://ndownloader.figshare.com/files/541804 %K positioned %K nucleosomes %K flanking %K transcription %K binding %X

A. Heatmaps of MNase midpoints (columns 1–2) and DNase I cuts (column 3) surrounding 1000 randomly sampled ChIP-seq peaks for CTCF, NF-kB, Irf4, GABP and C-fos. Heatmap rows are ordered from top to bottom by the nucleosome array log likelihood ratio (LLR). Columns 2 and 3 are aligned according to the most likely location of the upstream and downstream arrays of positioned nucleosomes. B. Aggregate MNase midpoint and DNase I cutsite depths across all regions and for the subset of regions with LLR>500.

%I PLOS Genetics