20 Nematode Proteomes

2012-09-24T12:03:51Z (GMT) by Sujai Kumar
<p>Data for PhD thesis on "Next-generation Nematode Genomes" Sujai Kumar </p> <p>This tgz file has 20 Nematode protein fasta files used in Chapter 3 "Annotating nematode genomes"</p> <p>The original files were obtained from WormBase (WS230), <a href="http://nematod.es,">http://nematod.es,</a> and <a href="http://www.inra.fr/meloidogyne_incognita/genomic_resources">www.inra.fr/meloidogyne_incognita/genomic_resources</a></p> <p>The fasta files have been cleaned up:</p> <p>a) all whitespace converted to spaces in sequence headers (otherwise NCBI's makeblastdb fails)</p> <p>b) multi-line sequences have been converted to single line</p> <p>c) sequence IDs have been prefixed with a species abbreviation:</p> <p>Caenorhabditis elegans (ce)</p> <p>Caenorhabditis briggsae (cbg)</p> <p>Caenorhabditis sp. 5 (csp5)</p> <p>Caenorhabditis remanei (cr)</p> <p>Caenorhabditis brenneri (cbn)</p> <p>Caenorhabditis sp. 11 (csp11)</p> <p>Caenorhabditis japonica (cj)</p> <p>Caenorhabditis angaria (ca)</p> <p>Pristionchus pacificus (pp)</p> <p>Strongyloides ratti (sr)</p> <p>Bursaphelenchus xylophilus (bx)</p> <p>Meloidogyne hapla (mh)</p> <p>Meloidogyne incognita (mi)</p> <p>Meloidogyne floridensis (mf)</p> <p>Ascaris suum (as)</p> <p>Brugia malayi (bm)</p> <p>Litomosoides sigmodontis (ls)</p> <p>Acanthocheilonema viteae (av)</p> <p>Dirofilaria immitis (di)</p> <p>Trichinella spiralis (ts)</p> <p> </p> <p> </p>




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