10.1371/journal.pone.0145735.g005
Linda Glaser
Linda
Glaser
Michelle Carstensen
Michelle
Carstensen
Sheryl Shaw
Sheryl
Shaw
Suelee Robbe-Austerman
Suelee
Robbe-Austerman
Arno Wunschmann
Arno
Wunschmann
Dan Grear
Dan
Grear
Tod Stuber
Tod
Stuber
Bruce Thomsen
Bruce
Thomsen
Estimated time of most recent common ancestor (MRCA) of <i>Mycobacterium bovis</i> and Bayesian maximum clade credibility phylogeny from affected cattle farms and wild white-tailed deer in Minnesota, 2005–2009, and <i>M</i>. <i>bovis</i> isolates associated with a Texas beef herd sampled 2013–2014.
Public Library of Science
2016
Northwestern Minnesota Bovine tuberculosis
Bovine tuberculosis
beef cattle
herd cattle tests
Minnesota cow
Odocoileus virginianus
Descriptive Epidemiology
Aggressive surveillance
slaughter surveillance
Whole Genome Sequencing Analysis
Whole genomic sequencing
12 beef cattle herds
United States
management efforts
infection
2016-01-28 12:37:38
Figure
https://plos.figshare.com/articles/figure/_Estimated_time_of_most_recent_common_ancestor_MRCA_of_Mycobacterium_bovis_and_Bayesian_maximum_clade_credibility_phylogeny_from_affected_cattle_farms_and_wild_white_tailed_deer_in_Minnesota_2005_2009_and_M_bovis_isolates_associated_with_a_Texas_beef_herd/1638928
<p>(A) Phylogenetic relationship between the Minnesota and Texas isolates with an estimated MRCA of 1999 (95% HPD [1991, 2005]). Node labels are the posterior probability. 95% HPD bars are displayed on nodes with >0.4 posterior probability (B) Isolates from only the Minnesota phylogeny in an unresolved maximum clade credibility tree. Nodes with ≤ 0.40 posterior support are collapsed onto unresolved branches. Node labels are the posterior probability and 95% HPD bars are displayed on nodes with >0.4 posterior probability (C) Density of marginal posterior probability MRCA estimates for <i>M</i>. <i>bovis</i> isolated from cattle and white-tailed deer from the Minnesota outbreak. The isolate names contain information on species (Deer = white-tailed deer and Herd = cattle), cattle herd (A-L; <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0145735#pone.0145735.s006" target="_blank">S1 Text</a>), and individual deer identification (1–27); corresponding to the <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0145735#pone.0145735.s003" target="_blank">S2 Table</a>. White-tailed deer isolate marked †, was from a pooled sample from multiple individuals.</p>