Gene names obtained when finding homologs and orthologs to Smn (a1 and a2, respectively) and Spf30 (b1 and b2, respectively) proteins using orthoFind and different query sequences.
Pablo Mier
Miguel A. Andrade-Navarro
Antonio J. PĂ©rez-Pulido
10.1371/journal.pone.0143906.g004
https://plos.figshare.com/articles/figure/_Gene_names_obtained_when_finding_homologs_and_orthologs_to_Smn_a1_and_a2_respectively_and_Spf30_b1_and_b2_respectively_proteins_using_orthoFind_and_different_query_sequences_/1615859
<p>Four executions were made for each group using either one of the following query sequences: <i>H</i>. <i>sapiens</i>, <i>S</i>. <i>pombe</i>, <i>H</i>. <i>sapiens</i> plus <i>S</i>. <i>pombe</i> (using <i>H</i>. <i>sapiens</i> as reference for the alignments), or <i>S</i>. <i>pombe</i> plus <i>H</i>. <i>sapiens</i> (using <i>S</i>. <i>pombe</i> as reference for the alignments). Matching genes between the different executions are represented by the Venn diagrams, including the gene names and their number of occurrences (within parentheses). Gene names matching with the query name are highlighted in red color. Other = Uncharacterized proteins.</p>
2015-12-01 16:03:37
reference proteomes
Orthologous Proteins
domain architecture
web application
orthologous proteins
orthologous protein sequences
protein multidomain problem
annotation process
user databases
tool
orthoFind Facilitates
query sequences
annotation projects