Maize and Sorghum Genesets
James Schnable
10.6084/m9.figshare.1537501.v1
https://figshare.com/articles/dataset/Maize_and_Sorghum_Genesets/1537501
<p>This dataset consists of a set of bed files describing the positions of syntenic and nonsyntenic genes in maize, as well as aggregate counts for these two gene classes in sliding windows of either 5 MB (step size = 1 MB) or 1 MB (step size = 1 MB, no overlap).</p>
<p>Two additional bed files describe the predicted orthologous locations of sorghum genes within the two subgenomes of maize.</p>
<p>One attempts to predict the location for each sorghum gene in each maize subgenome (33,032*2=66,064) and succeeds in predicting locations in 59,384 cases. </p>
<p>The second file only considers genes syntenically conserved between sorghum and setaria as a method of eliminating the influence of recent gene insertion hotspots within the sorghum genome. This file is recommended for most applications.</p>
<p>A product of the Schnable Lab@UNL</p>
2015-09-09 21:49:26
comparative genomics
grasses
Sorghum
maize
zea mays
Computational Biology
Genetics
Plant Biology
Evolutionary Biology