10.1371/journal.pone.0117874.g003
Hakime Öztürk
Hakime
Öztürk
Elif Ozkirimli
Elif
Ozkirimli
Arzucan Özgür
Arzucan
Özgür
Multiple sequence alignment on the protein data set.
Public Library of Science
2015
similarity
Penicillin Binding Proteins
ligand
lactamase
edge weight settings
pbp
lactam
protein
information
cell wall biosynthesis
Antibiotic resistance
Protein Data Bank
model
2015-02-17 02:42:37
Figure
https://plos.figshare.com/articles/figure/_Multiple_sequence_alignment_on_the_protein_data_set_/1310625
<p>Multiple sequence alignment was performed on 86 proteins in the data set using COBALT [<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0117874#pone.0117874.ref055" target="_blank">55</a>]. The resulting phylogenetic tree is visualized using Interactive tree of life (ITOL) [<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0117874#pone.0117874.ref056" target="_blank">56</a>, <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0117874#pone.0117874.ref057" target="_blank">57</a>] (Blue: PBPs, Green: Ambler Class A, Dark Blue: Ambler Class C, Yellow: Ambler Class D, Orange: Ambler Class B. Same coloring scheme is used in the next figure.)</p>