10.1371/journal.pone.0117874.g003 Hakime Öztürk Hakime Öztürk Elif Ozkirimli Elif Ozkirimli Arzucan Özgür Arzucan Özgür Multiple sequence alignment on the protein data set. Public Library of Science 2015 similarity Penicillin Binding Proteins ligand lactamase edge weight settings pbp lactam protein information cell wall biosynthesis Antibiotic resistance Protein Data Bank model 2015-02-17 02:42:37 Figure https://plos.figshare.com/articles/figure/_Multiple_sequence_alignment_on_the_protein_data_set_/1310625 <p>Multiple sequence alignment was performed on 86 proteins in the data set using COBALT [<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0117874#pone.0117874.ref055" target="_blank">55</a>]. The resulting phylogenetic tree is visualized using Interactive tree of life (ITOL) [<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0117874#pone.0117874.ref056" target="_blank">56</a>, <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0117874#pone.0117874.ref057" target="_blank">57</a>] (Blue: PBPs, Green: Ambler Class A, Dark Blue: Ambler Class C, Yellow: Ambler Class D, Orange: Ambler Class B. Same coloring scheme is used in the next figure.)</p>