10.1371/journal.pgen.1004915.g003
Irina Makarevitch
Irina
Makarevitch
Amanda J. Waters
Amanda
J. Waters
Patrick T. West
Patrick
T. West
Michelle Stitzer
Michelle
Stitzer
Candice N. Hirsch
Candice
N. Hirsch
Jeffrey Ross-Ibarra
Jeffrey
Ross-Ibarra
Nathan M. Springer
Nathan
M. Springer
Stress-induced up-regulation of gene expression correlates with the variation in TE presence.
Public Library of Science
2015
Abiotic Stress Transposable elements
TE families
gene expression response
stress conditions
gene expression
dna
Many genes exhibit
abiotic stress
TE transcript levels
2015-01-08 03:30:25
Figure
https://plos.figshare.com/articles/figure/_Stress_induced_up_regulation_of_gene_expression_correlates_with_the_variation_in_TE_presence_/1286605
<p>(A) Proportion of genes up-regulated in B73 that are also up-regulated in Mo17 and Oh43 is shown for all TE families under the stress condition with highest enrichment for the TE family. (B) The relative expression levels in stress compared to control treatments (log<sub>2</sub> ratio) is shown for B73, Mo17, and Oh43 for each of the 10 expressed genes that are polymorphic for insertions of TEs. The presence/absence of the TE for each genotype-inbred combination is shown by ‘+’ and ‘-‘ symbols. The genes are as follows: 1-GRMZM2G102447; 2-GRMZM2G108057; 3-GRMZM2G071206; 4-GRMZM2G108149; 5-GRMZM2G400718; 6-GRMZM2G347899; 7-GRMZM2G517127; 8-GRMZM2G378770; 9-GRMZM2G177923; 10- GRMZM2G504524. All genes with TE insertion polymorphism are listed in <a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1004915#pgen.1004915.s013" target="_blank">S8 Table</a>.</p>