%0 Generic
%A Vanni, Chiara
%D 2020
%T Agnostos-wf test dataset
%U https://figshare.com/articles/dataset/Agnostos-wf_test_dataset/12630581
%R 10.6084/m9.figshare.12630581.v3
%2 https://ndownloader.figshare.com/files/23854697
%2 https://ndownloader.figshare.com/files/23854703
%2 https://ndownloader.figshare.com/files/23854706
%K test dataset
%K TARA samples
%K contigs
%K Bioinformatics
%K Computational Biology
%K Microbiology
%X
Test dataset for the agnostos-wf (https://github.com/functional-dark-side/agnostos-wf).
The dataset consists of 3 TARA Ocean surface samples from the Indian Ocean (IO), all within a size fraction of 0.1-0.22 micro-m (giant viruses, archaea and bacteria enriched fraction).
Two samples are used to test the DB-creation module:
TARA_041_SRF_0.1-0.22 (90,135 contigs)
TARA_039_SRF_0.1-0.22 (118,883 contigs)
And one sample is used to test the DB-update module:
TARA_038_SRF_0.1-0.22 (157,925 contigs)
Contextual data for the chosen samples can be found in the file: TARA_IO_samples_contextual_data.tsv.gz
%I figshare