10.6084/m9.figshare.11678259.v1 Laetitia Wilkins Laetitia Wilkins David Coil David Coil 16S rRNA gene phylogenetic tree figshare 2020 16S rRNA diversity Lonepinella koalarum Phylogenetic tree Figure Veterinary Immunology Conservation and Biodiversity Evolutionary Biology 2020-01-22 01:17:54 Dataset https://figshare.com/articles/dataset/16S_rRNA_gene_phylogenetic_tree/11678259 The 16S rRNA gene sequence from the genome assembly was extracted from RAST by searching for ‘ssu rRNA’ in the function search of the SEED genome browser. Following the protocol outlined in Dunitz et al. (2015), the sequence was uploaded to the Ribosomal Database Project (RDP) and grouped with all sequences in the Pasteurellaceae family and one chosen outgroup, Agarivoran spp., to root the tree. The taxon names from the RDP output file were manually cleaned up and used to build a phylogenetic tree with the program FastTree.