Time for several k-mer counting tools to retrieve the counts of 9.7 m randomly chosen k-mers (y axis), plotted against the number of distinct k-mers in the data set being queried (x axis).
Qingpeng Zhang
Jason Pell
Rosangela Canino-Koning
Adina Chuang Howe
C. Titus Brown
10.1371/journal.pone.0101271.g004
https://plos.figshare.com/articles/figure/_Time_for_several_k_mer_counting_tools_to_retrieve_the_counts_of_9_7_m_randomly_chosen_k_mers_y_axis_plotted_against_the_number_of_distinct_k_mers_in_the_data_set_being_queried_x_axis_/1118673
<p>BFCounter, DSK, Turtle, KAnalyze, and KMC do not support this functionality.</p>
2014-07-25 03:13:45
Computational biology
genome analysis
Genomic databases
genetics
genomics
molecular biology
Molecular biology techniques
Sequencing techniques
Genome sequencing
Sequence analysis
Computing methods
cloud computing
software engineering
Software tools
k-mer
counting
tools
retrieve
counts
randomly
chosen
k-mers
plotted
queried