Illustrating PhyloNet-HMM.
Kevin J. Liu
Jingxuan Dai
Kathy Truong
Ying Song
Michael H. Kohn
Luay Nakhleh
10.1371/journal.pcbi.1003649.g003
https://plos.figshare.com/articles/figure/_Illustrating_PhyloNet_HMM_/1056122
<p>The structure of the HMM (only states are shown) that PhyloNet-HMM builds for the simple scenario of one individual sampled per species in Fig. 2. The three states correspond to genomic regions whose evolution follows the parental tree , and there is a state for each of the three possible local genealogies. The three states correspond to genomic regions whose evolution follows the parental tree , and there is a state for each of the three possible local genealogies. is the start state. See text for emission and transition probabilities.</p>
2014-06-12 03:29:39
Computational biology
Evolutionary biology
genetics
genomics