Illustrating PhyloNet-HMM. Kevin J. Liu Jingxuan Dai Kathy Truong Ying Song Michael H. Kohn Luay Nakhleh 10.1371/journal.pcbi.1003649.g003 https://plos.figshare.com/articles/figure/_Illustrating_PhyloNet_HMM_/1056122 <p>The structure of the HMM (only states are shown) that PhyloNet-HMM builds for the simple scenario of one individual sampled per species in Fig. 2. The three states correspond to genomic regions whose evolution follows the parental tree , and there is a state for each of the three possible local genealogies. The three states correspond to genomic regions whose evolution follows the parental tree , and there is a state for each of the three possible local genealogies. is the start state. See text for emission and transition probabilities.</p> 2014-06-12 03:29:39 Computational biology Evolutionary biology genetics genomics