JSim, an open-source modeling system for data analysis and reproducibility in research
Bart Jardine
Gary Raymond
Erik Butterworth
Maxwell Neal
James B Bassingthwaighte
10.6084/m9.figshare.1044285.v1
https://figshare.com/articles/poster/JSim_an_open_source_modeling_system_for_data_analysis_and_reproducibility_in_research/1044285
<p>JSim is a Java-based simulation system for building quantitative numeric models and analyzing them with respect to experimental reference data. JSim's primary focus is in physiology and biomedicine, however its computational engine is quite general and applicable to a wide range of scientific domains. JSim models may intermix ODEs, PDEs, implicit equations, integrals, summations, discrete events and procedural code as appropriate. JSim's model compiler can automatically insert conversion factors for compatible physical units as well as detect and reject unit unbalanced equations. JSim also imports and exports model archive formats SBML and CellML. This poster was presented at Experimental Biology 2014.</p>
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2014-06-03 21:38:32
modeling
experimental design
uncertainty quantification
data analysis
parameter estimation
vpr
Computational Biology
Bioinformatics
Biological Engineering
Physiology
Cardiology
Biotechnology
Cell Biology
Genetics