Ryan Coleman

Postdoctoral fellow
UCSF

Publications

  • ZINC: A free tool to discover chemistry for biology DOI: 10.1021/ci3001277
  • Ligand discovery from a dopamine D 3 receptor homology model and crystal structure DOI: 10.1038/nchembio.662
  • Protein Pockets: Inventory, Shape, and Comparison DOI: 10.1021/ci900397t
  • Shape and evolution of thermostable protein structure DOI: 10.1002/prot.22558
  • Protein pockets: Inventory, shape, and comparison DOI: 10.1021/ci900397t
  • Shape and evolution of thermostable protein structure DOI: 10.1002/prot.22558
  • Finding and Characterizing Tunnels in Macromolecules with Application to Ion Channels and Pores DOI: 10.1529/biophysj.108.135970
  • Finding and characterizing tunnels in macromolecules with application to ion channels and pores DOI: 10.1529/biophysj.108.135970
  • Structure-based maximal affinity model predicts small-molecule druggability DOI: 10.1038/nbt1273
  • Travel Depth, a New Shape Descriptor for Macromolecules: Application to Ligand Binding DOI: 10.1016/j.jmb.2006.07.022
  • Protonation of excited state pyrene-1-carboxylate by phosphate and organic acids in aqueous solution studied by fluorescence spectroscopy DOI: 10.1529/biophysj.106.088740
  • Structure-based identification of small molecule binding sites using a free energy model DOI: 10.1021/ci600229z
  • Travel Depth, a New Shape Descriptor for Macromolecules: Application to Ligand Binding DOI: 10.1016/j.jmb.2006.07.022
  • An intuitive approach to measuring protein surface curvature DOI: 10.1002/prot.20680
  • An intuitive approach to measuring protein surface curvature DOI: 10.1002/prot.20680
  • QuASM: A system for question answering using semi-structured data
  • QuASM DOI: 10.1145/544225.544228

Ryan's public data